Removing empty bins from Items / Stock Counts with Bins

Good Afternoon,

We have a scenario where an item is moved between many bins. We are  using the Delete bins utility unsuccessfully. When we create a stock count we only want it to show those bins that have stock in them, if possible. Also, when we remove the empty bins from an item it is removing the default bins setup that we had on our Item/Quantities sites card.

Has anyone has issues with this before?

Please advise.

Thanks,
Stephanie